Pseudomonas denitrificans ATCC 13867, H681_17840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd04458
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 122 195 3.4E-26
CDD cd04458 CSP_CDS IPR002059 Cold-shock protein, DNA-binding 129 189 1.80802E-31
Pfam PF00313 'Cold-shock' DNA-binding domain IPR002059 Cold-shock protein, DNA-binding 129 190 2.0E-25
PANTHER PTHR11544 COLD SHOCK DOMAIN CONTAINING PROTEINS - - 128 192 4.7E-20
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 130 145 1.7E-15
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 126 190 3.21E-22
NCBIfam NF041604 NCBIFAM: cold shock protein N-terminal extension domain IPR048090 Cold shock protein-like, N-terminal extension domain 1 108 1.4E-36
SMART SM00357 csp_8 IPR011129 Cold shock domain 129 192 1.6E-24
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 150 159 1.7E-15
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 165 183 1.7E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.