Pseudomonas denitrificans ATCC 13867, H681_17865

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0002161 aminoacyl-tRNA editing activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.960.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006433 prolyl-tRNA aminoacylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00587
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004827 proline-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006418 tRNA aminoacylation for protein translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00587
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00587
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr00970 Aminoacyl-tRNA biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01046 Prolyl-tRNA synthetase signature IPR002316 Proline-tRNA ligase, class IIa 104 115 9.0E-20
FunFam G3DSA:3.30.930.10:FF:000043 Proline--tRNA ligase - - 15 301 0.0
SUPERFAMILY SSF52954 Class II aaRS ABD-related - - 460 570 5.74E-29
PRINTS PR01046 Prolyl-tRNA synthetase signature IPR002316 Proline-tRNA ligase, class IIa 68 86 9.0E-20
Hamap MF_01569 Proline--tRNA ligase [proS]. IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 1 570 42.198944
Pfam PF03129 Anticodon binding domain IPR004154 Anticodon-binding 473 567 2.7E-15
NCBIfam TIGR00409 JCVI: proline--tRNA ligase IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type 1 567 0.0
CDD cd00861 ProRS_anticodon_short IPR044140 Proline--tRNA ligase, anticodon binding domain 471 566 4.50929E-35
SUPERFAMILY SSF55826 YbaK/ProRS associated domain IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily 218 388 6.02E-30
PANTHER PTHR42753 MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER - - 2 556 0.0
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 3 238 1.4E-73
Gene3D G3DSA:3.90.960.10 - IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily 242 383 5.7E-47
FunFam G3DSA:3.90.960.10:FF:000001 Proline--tRNA ligase - - 244 384 1.7E-67
Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) 95 457 2.6E-50
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 10 476 3.69E-107
FunFam G3DSA:3.30.930.10:FF:000097 Proline--tRNA ligase - - 341 458 8.3E-52
PRINTS PR01046 Prolyl-tRNA synthetase signature IPR002316 Proline-tRNA ligase, class IIa 144 155 9.0E-20
Gene3D G3DSA:3.40.50.800 - IPR036621 Anticodon-binding domain superfamily 466 564 6.4E-29
PRINTS PR01046 Prolyl-tRNA synthetase signature IPR002316 Proline-tRNA ligase, class IIa 134 142 9.0E-20
CDD cd00779 ProRS_core_prok IPR033730 Prokaryote proline-tRNA ligase core domain 17 456 0.0
CDD cd04334 ProRS-INS - - 226 385 1.23029E-76
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 384 465 5.9E-17
Pfam PF04073 Aminoacyl-tRNA editing domain IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain 257 375 6.5E-27
PIRSF PIRSF001535 ProRS_1 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 1 571 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.