Pseudomonas denitrificans ATCC 13867, H681_17990

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00028
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07685
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00313 JCVI: cobyric acid synthase CobQ IPR004459 Cobyric acid synthase CobQ 25 495 0.0
CDD cd05389 CobQ_N IPR047045 Cobyric acid synthase, N-terminal domain 24 245 0.0
Hamap MF_00028 Cobyric acid synthase [cobQ]. IPR004459 Cobyric acid synthase CobQ 1 504 214.070923
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 303 405 1.5E-14
Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain IPR011698 CobB/CobQ-like glutamine amidotransferase 271 454 6.6E-59
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 272 464 7.21E-40
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 22 261 3.2E-63
Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain 25 249 1.0E-22
PANTHER PTHR21343 DETHIOBIOTIN SYNTHETASE - - 24 503 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 23 257 1.65E-58
CDD cd01750 GATase1_CobQ IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 272 461 1.64708E-74

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.