Pseudomonas aeruginosa PACS2, A0K_RS09660

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071705 nitrogen compound transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other PACS2 genes in this class
Transport of small molecules Other PACS2 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.3720.10 IPR035906 MetI-like superfamily 18 239 3.2E-48
SUPERFAMILY SSF161098 IPR035906 MetI-like superfamily 24 223 7.59E-42
ProSiteProfiles PS50928 ABC transporter integral membrane type-1 domain profile. IPR000515 ABC transporter type 1, transmembrane domain MetI-like 29 230 21.84
TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain 25 131 1.0E-17
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 44 238 6.4E-25
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 29 228 3.53453E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.