Pseudomonas aeruginosa PAO1, PA4004

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA4004
Name
Synonym: ybeA
Replicon chromosome
Genomic location 4485349 - 4485816 (- strand)
Transposon Mutants 3 transposon mutants in PAO1

Cross-References

RefSeq NP_252693.1
GI 15599199
Affymetrix PA4004_at
Entrez 878973
GenBank AAG07391.1
INSDC AAG07391.1
NCBI Locus Tag PA4004
protein_id(GenBank) gb|AAG07391.1|AE004817_15|gnl|PseudoCAP|PA4004
TIGR NTL03PA04004
UniParc UPI00000C5BBA
UniProtKB Acc Q9HX23
UniProtKB ID RLMH_PSEAE
UniRef100 UniRef100_A6V0A6
UniRef50 UniRef50_A6V0A6
UniRef90 UniRef90_A6V0A6

Product

Feature Type CDS
Coding Frame 1
Product Name
conserved hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 2.69
Kyte-Doolittle Hydrophobicity Value -0.350
Molecular Weight (kDa) 17.8
Isoelectric Point (pI) 9.17

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 419 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001679 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA4004

Human Homologs

References

The complete genome sequence of Escherichia coli K-12.
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y
Science 1997 Sep 5;277(5331):1453-62
PubMed ID: 9278503