Pseudomonas aeruginosa PAO1, PA5438

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA5438
Name
Replicon chromosome
Genomic location 6121172 - 6122053 (- strand)
Transposon Mutants 4 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_254125.1
GI 15600631
Affymetrix PA5438_at
Entrez 878524
GenBank AAG08823.1
INSDC AAG08823.1
NCBI Locus Tag PA5438
protein_id(GenBank) gb|AAG08823.1|AE004956_7|gnl|PseudoCAP|PA5438
TIGR NTL03PA05439
UniParc UPI00000C6007
UniProtKB Acc Q9HTC8
UniProtKB ID Q9HTC8_PSEAE
UniRef100 UniRef100_W0Z3P9
UniRef50 UniRef50_C1DH57
UniRef90 UniRef90_A0A024H9M2

Product

Feature Type CDS
Coding Frame 1
Product Name
probable transcriptional regulator
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 1.24
Kyte-Doolittle Hydrophobicity Value 0.079
Molecular Weight (kDa) 31.6
Isoelectric Point (pI) 7.22

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 236 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004989 (552 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5438

Human Homologs

References

No references are associated with this feature.