Pseudomonas aeruginosa PAO1, PA0003 (recF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA0003
Name
recF
Replicon chromosome
Genomic location 3169 - 4278 (+ strand)
Transposon Mutants 3 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_064723.1
GI 15595201
Affymetrix PA0003_recF_at
DNASU PaCD00006005
Entrez 879229
GenBank AAG03393.1
INSDC AAG03393.1
NCBI Locus Tag PA0003
protein_id(GenBank) gb|AAG03393.1|AE004440_3|gnl|PseudoCAP|PA0003
TIGR NTL03PA00004
UniParc UPI0000133565
UniProtKB Acc Q9I7C3
UniProtKB ID RECF_PSEAE
UniRef100 UniRef100_Q02V78
UniRef50 UniRef50_P13456
UniRef90 UniRef90_Q02V78

Product

Feature Type CDS
Coding Frame 1
Product Name
RecF protein
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 4.23
Kyte-Doolittle Hydrophobicity Value -0.249
Molecular Weight (kDa) 41.5
Isoelectric Point (pI) 8.15

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold Protein Structure Database

Available for P. aeruginosa PAO1.

View predicted 3D structure in AlphaFold DB

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 464 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000003 (553 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0003
Search term: recF
Search term: RecF protein

Human Homologs

References

Structure of the dnaA region of Pseudomonas putida: conservation among three bacteria, Bacillus subtilis, Escherichia coli and P. putida.
Fujita MQ, Yoshikawa H, Ogasawara N
Mol Gen Genet 1989 Feb;215(3):381-7
PubMed ID: 2540413
Sequence and complementation analysis of recF genes from Escherichia coli, Salmonella typhimurium, Pseudomonas putida and Bacillus subtilis: evidence for an essential phosphate binding loop.
Sandler SJ, Chackerian B, Li JT, Clark AJ
Nucleic Acids Res 1992 Feb 25;20(4):839-45
PubMed ID: 1542576