Pseudomonas fluorescens A506, PflA506_5303 (hcp1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas fluorescens A506
GCF_000262325.2|latest
Locus Tag
PflA506_5303
Name
hcp1
Replicon chromosome
Genomic location 5805855 - 5806343 (+ strand)

Cross-References

RefSeq YP_006326689.1
GI 387896392
Entrez 12961802
INSDC AFJ55924.1
NCBI Locus Tag PflA506_5303
UniParc UPI00025E8E64
UniProtKB Acc I2BNU1
UniProtKB ID I2BNU1_PSEFL
UniRef100 UniRef100_I2BNU1
UniRef50 UniRef50_Q4K3N6
UniRef90 UniRef90_Q4K3N6

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion system effector Hcp1
Synonyms
Evidence for Translation
Charge (pH 7) -0.08
Kyte-Doolittle Hydrophobicity Value -0.380
Molecular Weight (kDa) 17.5
Isoelectric Point (pI) 6.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 77 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000084 (770 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PflA506_5303
Search term: hcp1

References

No references are associated with this feature.