Pseudomonas syringae pv. syringae B728a, Psyr_1890

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a - Assembly GCF_000012245.1
GCF_000012245.1|latest
Locus Tag
Psyr_1890
Name
Replicon chromosome
Genomic location 2160584 - 2161180 (- strand)

Cross-References

RefSeq YP_234972.1
GI 66045131
Entrez 3367399
INSDC AAY36934.1
NCBI Locus Tag Psyr_1890
UniParc UPI000050D7FE
UniProtKB Acc Q4ZV88
UniProtKB ID Q4ZV88_PSEU2
UniRef100 UniRef100_Q4ZV88
UniRef50 UniRef50_Q4ZV88
UniRef90 UniRef90_Q4ZV88

Product

Feature Type CDS
Coding Frame 1
Product Name
type III effector HopAP1
Synonyms
Evidence for Translation
Charge (pH 7) -1.86
Kyte-Doolittle Hydrophobicity Value -0.954
Molecular Weight (kDa) 22266.3
Isoelectric Point (pI) 6.37

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 8 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG019218 (1 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_1890

Human Homologs

References

No references are associated with this feature.