Pseudomonas syringae pv. syringae B728a, Psyr_1894

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a - Assembly GCF_000012245.1
GCF_000012245.1|latest
Locus Tag
Psyr_1894
Name
Replicon chromosome
Genomic location 2163618 - 2166362 (- strand)

Cross-References

RefSeq YP_234976.1
GI 66045135
Entrez 3367404
INSDC AAY36938.1
NCBI Locus Tag Psyr_1894
UniParc UPI0000394D89
UniProtKB Acc Q4ZV84
UniProtKB ID Q4ZV84_PSEU2
UniRef100 UniRef100_Q4ZV84
UniRef50 UniRef50_B1J601
UniRef90 UniRef90_Q884J3

Product

Feature Type CDS
Coding Frame 1
Product Name
SNF2-like protein
Synonyms
Evidence for Translation
Charge (pH 7) 0.57
Kyte-Doolittle Hydrophobicity Value -0.419
Molecular Weight (kDa) 104.1
Isoelectric Point (pI) 7.05

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 399 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000772 (550 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_1894
Search term: SNF2-like protein

Human Homologs

Ensembl 97, assembly GRCh38.p12
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:HGNC Symbol;Acc:HGNC:11097]
E-value: 1.5e-71
Percent Identity: 36.9

References

No references are associated with this feature.