Pseudomonas aeruginosa UCBPP-PA14, PA14_00860 (tagT1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_00860
Name
tagT1
Replicon chromosome
Genomic location 83929 - 84648 (- strand)
Transposon Mutants in orthologs 2 transposon mutants in orthologs
CommentHcp Secretion Island-I-encoded type VI secretion system (H1-T6SS)

Cross-References

RefSeq YP_788229.1
GI 116053794
Entrez 4380420
INSDC ABJ15030.1
NCBI Locus Tag PA14_00860
UniParc UPI0000396C0D
UniProtKB Acc Q02V07
UniProtKB ID Q02V07_PSEAB
UniRef100 UniRef100_A0A077JNV2
UniRef50 UniRef50_F6AF48
UniRef90 UniRef90_A6UXK5

Product

Feature Type CDS
Coding Frame 1
Product Name
TagT1
Product Name Confidence: Class 1
Synonyms ABC transporter ATP-binding protein
Evidence for Translation
Charge (pH 7) 5.05
Kyte-Doolittle Hydrophobicity Value -0.101
Molecular Weight (kDa) 26.0
Isoelectric Point (pI) 8.79

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000072 (411 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_00860
Search term: tagT1
Search term: TagT1

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 9.8e-14
Percent Identity: 31.6

References

RsmA and AmrZ orchestrate the assembly of all three type VI secretion systems in Pseudomonas aeruginosa.
Allsopp LP, Wood TE, Howard SA, Maggiorelli F, Nolan LM, Wettstadt S, Filloux A
Proc Natl Acad Sci U S A 2017 Jul 18;114(29):7707-7712
PubMed ID: 28673999