Pseudomonas aeruginosa UCBPP-PA14, PA14_58410 (opdP)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_58410
Name
opdP
Replicon chromosome
Genomic location 5202483 - 5203937 (+ strand)
Transposon Mutants 2 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 3 transposon mutants in orthologs

Cross-References

RefSeq YP_792846.1
GI 116052532
Entrez 4382622
INSDC ABJ13768.1
NCBI Locus Tag PA14_58410
UniParc UPI0000E44BE7
UniProtKB Acc Q02GU0
UniProtKB ID Q02GU0_PSEAB
UniRef100 UniRef100_S0IPQ7
UniRef50 UniRef50_Q9HVS0
UniRef90 UniRef90_Q9HVS0

Product

Feature Type CDS
Coding Frame 1
Product Name
glycine-glutamate dipeptide porin OpdP
Product Name Confidence: Class 2
Synonyms porin
Evidence for Translation
Charge (pH 7) -7.35
Kyte-Doolittle Hydrophobicity Value -0.495
Molecular Weight (kDa) 53.2
Isoelectric Point (pI) 5.80

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3SYB MEMBRANE PROTEIN 07/16/11 Crystal structure of Pseudomonas aeruginosa OccD3 (OpdP) Pseudomonas aeruginosa 2.7 X-RAY DIFFRACTION 97.8

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 17 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004088 (487 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_58410
Search term: opdP

Human Homologs

References

Involvement of two related porins, OprD and OpdP, in the uptake of arginine by Pseudomonas aeruginosa.
Tamber S, Hancock RE
FEMS Microbiol Lett 2006 Jul;260(1):23-9
PubMed ID: 16790014