Pseudomonas mendocina ymp, Pmen_0004 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas mendocina ymp
GCF_000016565.1|latest |
| Locus Tag |
Pmen_0004
|
| Name |
gyrB
|
| Replicon | chromosome |
| Genomic location | 3820 - 6240 (+ strand) |
Cross-References
| RefSeq | YP_001185511.1 |
| GI | 146305046 |
| EC Number | 5.99.1.3 |
| Entrez | 5106679 |
| INSDC | ABP82779.1 |
| NCBI Locus Tag | Pmen_0004 |
| UniParc | UPI0000E786DC |
| UniProtKB Acc | A4XN63 |
| UniProtKB ID | A4XN63_PSEMY |
| UniRef100 | UniRef100_A4XN63 |
| UniRef50 | UniRef50_P13364 |
| UniRef90 | UniRef90_C1DFU5 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
DNA gyrase subunit B
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -16.00 |
| Kyte-Doolittle Hydrophobicity Value | -0.411 |
| Molecular Weight (kDa) | 90.0 |
| Isoelectric Point (pI) | 5.67 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 633 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000004 (553 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: Pmen_0004
Search term: gyrB
Search term: DNA gyrase subunit B
|
Human Homologs
|
Ensembl
107, assembly
GRCh38.p13
|
DNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]
E-value:
2.6e-31
Percent Identity:
25.7
|
References
No references are associated with this feature.