Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a5560
Name
Replicon chromosome
Genomic location 6704439 - 6704927 (+ strand)

Cross-References

RefSeq YP_004357094.1
GI 330812632
Entrez 10474865
INSDC AEA72090.1
NCBI Locus Tag PSEBR_a5560
UniParc UPI0002040BDD
UniProtKB Acc F2K713
UniProtKB ID F2K713_PSEBN
UniRef100 UniRef100_A0A0D0S5Z3
UniRef50 UniRef50_Q4K3N6
UniRef90 UniRef90_Q4K3N6

Product

Feature Type CDS
Coding Frame 1
Product Name
hemolysin co-regulated type VI secretion system effector
Synonyms
Evidence for Translation
Charge (pH 7) -0.08
Kyte-Doolittle Hydrophobicity Value -0.326
Molecular Weight (kDa) 17.5
Isoelectric Point (pI) 6.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 80 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000084 (770 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a5560

References

No references are associated with this feature.