Pseudomonas protegens Pf-5, PFL_6089 (hcp)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6089
Name
hcp
Replicon chromosome
Genomic location 6916187 - 6916675 (+ strand)

Cross-References

RefSeq YP_263147.1
GI 70733372
Entrez 3480459
INSDC AAY95277.1
NCBI Locus Tag PFL_6089
UniParc UPI000054E280
UniProtKB Acc Q4K3N6
UniProtKB ID Q4K3N6_PSEF5
UniRef100 UniRef100_Q4K3N6
UniRef50 UniRef50_Q4K3N6
UniRef90 UniRef90_Q4K3N6

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion system effector Hcp
Synonyms
Evidence for Translation
Charge (pH 7) -1.08
Kyte-Doolittle Hydrophobicity Value -0.440
Molecular Weight (kDa) 17.7
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 79 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000084 (770 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6089
Search term: hcp

References

No references are associated with this feature.