Pseudomonas protegens CHA0, PFLCHA0_c60530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c60530
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 6716694 - 6718631 (+ strand) |
Cross-References
| RefSeq | YP_008003285.1 |
| GI | 501683459 |
| Entrez | 15563970 |
| NCBI Locus Tag | PFLCHA0_c60530 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Rhs-family protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -10.41 |
| Kyte-Doolittle Hydrophobicity Value | -0.504 |
| Molecular Weight (kDa) | 71997.8 |
| Isoelectric Point (pI) | 6.09 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 7Q5P | TOXIN | 11/04/21 | Structure of VgrG1 from Pseudomonas protegens. | Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) | 3.3 | ELECTRON MICROSCOPY | 100.0 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 153 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000090 (3342 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c60530
Search term: Rhs-family protein
|
Human Homologs
References
No references are associated with this feature.