Pseudomonas aeruginosa LESB58, PALES_02061 (mdcD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa LESB58
GCF_000026645.1|latest |
| Locus Tag |
PALES_02061
|
| Name |
mdcD
|
| Replicon | chromosome |
| Genomic location | 232314 - 233177 (+ strand) |
Cross-References
| RefSeq | YP_002437814 |
| GI | 218888950 |
| Entrez | 7180274 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
malonate decarboxylase subunit beta
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -9.08 |
| Kyte-Doolittle Hydrophobicity Value | 0.040 |
| Molecular Weight (kDa) | 30.4 |
| Isoelectric Point (pI) | 4.50 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 5VJ1 | TRANSFERASE | 04/18/17 | Crystal structure of a Pseudomonas malonate decarboxylase hetero-tetramer in complex with coenzyme A | PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); PSEUDOMONAS FLUORESCENS (STRAIN ATCC BAA-477 / NRRL B-23932 / PF-5); PSEUDOMONAS AERUGINOSA | 2.995 | X-RAY DIFFRACTION | 99.7 |
| 5VIP | TRANSFERASE | 04/17/17 | Crystal structure of Pseudomonas malonate decarboxylase MdcD-MdcE hetero-dimer | PSEUDOMONAS AERUGINOSA | 1.857 | X-RAY DIFFRACTION | 99.7 |
| 5VIT | TRANSFERASE | 04/17/17 | Crystal structure of a Pseudomonas malonate decarboxylase hetero-tetramer in complex with malonate | PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); PSEUDOMONAS FLUORESCENS (STRAIN ATCC BAA-477 / NRRL B-23932 / PF-5); PSEUDOMONAS AERUGINOSA | 2.203 | X-RAY DIFFRACTION | 99.7 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 556 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000210 (492 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PALES_02061
Search term: mdcD
Search term: malonate decarboxylase subunit beta
|
Human Homologs
References
No references are associated with this feature.