Motif View

Internal ID 17654911
Source Database TransTermHP TERM 537
Feature Type terminator
Name
Rho-independent transcription terminator TERM 537
Sequence GCCCCTGCCATCGCGGCAGGGGC
Look for more occurrences
Start 2006551
End 2006573
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGCCAAAACGGCAA(5' tail) GCCCCTGCC(5' stem) ATCGC(loop) GGCAGGGGC(3' stem) TTTTTCCTGCCGGCG(3' tail). Confidence: 100. opp_overlap 2006546 2006545

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685