Motif View

Internal ID 17655666
Source Database TransTermHP TERM 106
Feature Type terminator
Name
Rho-independent transcription terminator TERM 106
Sequence CCCGGATGGAAGCATCCGGG
Look for more occurrences
Start 515010
End 515029
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCCAGCCCGAAGAA(5' tail) CCCGGATG(5' stem) GAAG(loop) CATCCGGG(3' stem) TTTTTTATTGCCCGG(3' tail). Confidence: 100. opp_overlap 514985 515010 515024

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685