Motif View

Internal ID 17655679
Source Database TransTermHP TERM 134
Feature Type terminator
Name
Rho-independent transcription terminator TERM 134
Sequence GCCGCGCACTGCGCGGC
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Start 630409
End 630425
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTAGAAAGCGCAAA(5' tail) GCCGCGC(5' stem) AGT(loop) GCGCGGC(3' stem) TTTGAAGGTGGTGGG(3' tail). Confidence: 90. opp_overlap 630409, overlap 630403 630402

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685