Motif View

Internal ID 17655742
Source Database TransTermHP TERM 219
Feature Type terminator
Name
Rho-independent transcription terminator TERM 219
Sequence GCCCCGCTTCGGCGGGGC
Look for more occurrences
Start 928866
End 928883
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGCGTGCAAGGAAG(5' tail) GCCCCGC(5' stem) TTCG(loop) GCGGGGC(3' stem) TTTTCTTTGTCCGTT(3' tail). Confidence: 100. opp_overlap 928866 928865, overlap 928861

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685