Motif View

Internal ID 17656115
Source Database TransTermHP TERM 800
Feature Type terminator
Name
Rho-independent transcription terminator TERM 800
Sequence GGCCGCCTAGCGGCC
Look for more occurrences
Start 3524647
End 3524661
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGAGAAAACAAAAAA(5' tail) GGCCGC(5' stem) TAG(loop) GCGGCC(3' stem) TTTTCCGGAGAACGA(3' tail). Confidence: 100. opp_overlap 3524647, overlap 3524640

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685