Motif View

Internal ID 17656574
Source Database TransTermHP TERM 1520
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1520
Sequence GCCCGGTCTTCGACCGGGC
Look for more occurrences
Start 6197882
End 6197900
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCCCCTGGAAAAA(5' tail) GCCCGGTC(5' stem) TTC(loop) GACCGGGC(3' stem) TTTTTCTTTTCCGTC(3' tail). Confidence: 100. opp_overlap 6197882

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685