Pseudomonas protegens Pf-5

Strain Overview
Organism Name Pseudomonas protegens Pf-5
Species Pseudomonas protegens
Strain Pf-5
Description/Title Sample from Pseudomonas protegens Pf-5
Annotated Genes 6273
Partial Genes
Host Information
Geographic Location
Location Name USA: Texas
Isolation Source soil

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604012
NCBI Taxonomy ID 220664
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas protegens Pf-5 chromosome, complete genome.

Annotated Features

Feature Count
gene 6273
CDS 6108
tRNA 70
pseudo 62
ncRNA 17
rRNA 16

Subcellular Localization

Localization Count
Cytoplasmic 2630
Cytoplasmic Membrane 1482
Periplasmic 213
Outer Membrane 163
Extracellular 63
Unknown 1415
Unknown (This protein may have multiple localization sites) 142
Flagellar 16
Fimbrial 7

Replicons

Name Length GC
Pseudomonas protegens Pf-5 chromosome, complete genome. 7074893 bp 63.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs