Pseudomonas aeruginosa LESB58

Strain Overview
Organism Name Pseudomonas aeruginosa LESB58
Species Pseudomonas aeruginosa
Strain LESB58
Description/Title Pseudomonas aeruginosa LESB58 - hypervirulent human isolate
Annotated Genes 6028
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Host Species Tissue Sampled lung
Geographic Location
Location Name United Kingdom: Liverpool
Isolation Source sputum
Sample Provider
Name
E-mail
Institution
Date Collected 1988

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 146
ppsA
23
mutL
3
aroE
6
guaA
11
trpE
1
acsA
6
nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Gapless Chromosome
Percent GC 66.3
Cross-References
NCBI BioSample Accession SAMEA1705916
NCBI Taxonomy ID 557722
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa LESB58 chromosome, complete genome.

Annotated Features

Feature Count
gene 6028
CDS 5927
tRNA 67
pseudo 34
ncRNA 21
rRNA 13

Subcellular Localization

Localization Count
No localization assigned and computational localization prediction using PSORTB not performed 6
Cytoplasmic 2695
Cytoplasmic Membrane 1323
Periplasmic 172
Outer Membrane 170
Extracellular 74
Unknown 1379
Unknown (This protein may have multiple localization sites) 146
Flagellar 18
Fimbrial 6
Host Associated 6
T3SS 3

Replicons

Name Length GC
Pseudomonas aeruginosa LESB58 chromosome, complete genome. 6601757 bp 66.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs