Pseudomonas aeruginosa M18

Strain Overview
Organism Name Pseudomonas aeruginosa M18
Species Pseudomonas aeruginosa
Strain M18
Description/Title Sample from Pseudomonas aeruginosa M18
Annotated Genes 5770
Partial Genes
Host Information
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1239
trpE
7
guaA
1
nuoD
4
mutL
3
acsA
16
ppsA
15
aroE
16
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6327754
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603849
NCBI Taxonomy ID 941193
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa M18 chromosome, complete genome.

Annotated Features

Feature Count
gene 5770
CDS 5684
tRNA 61
rRNA 13
pseudo 6
ncRNA 5
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2631
Cytoplasmic Membrane 1304
Periplasmic 168
Outer Membrane 158
Extracellular 69
Unknown 1210
Unknown (This protein may have multiple localization sites) 144
Flagellar 17
Fimbrial 4
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa M18 chromosome, complete genome. 6327754 bp 66.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs