Pseudomonas aeruginosa DK2

Strain Overview
Organism Name Pseudomonas aeruginosa DK2
Species Pseudomonas aeruginosa
Strain DK2
Description/Title Sample from Pseudomonas aeruginosa DK2
Annotated Genes 5959
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Denmark: Copenhagen
Isolation Source sputum

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 386
nuoD
4
aroE
17
trpE
3
ppsA
10
mutL
18
guaA
11
acsA
17
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6402658
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603895
NCBI Taxonomy ID 1093787
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa DK2 chromosome, complete genome.

Annotated Features

Feature Count
gene 5959
CDS 5883
tRNA 64
rRNA 12

Subcellular Localization

Localization Count
Cytoplasmic 2639
Cytoplasmic Membrane 1333
Periplasmic 172
Outer Membrane 156
Extracellular 70
Unknown 1376
Unknown (This protein may have multiple localization sites) 137
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa DK2 chromosome, complete genome. 6402658 bp 66.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs