Pseudomonas putida HB3267

Strain Overview
Organism Name Pseudomonas putida HB3267
Species Pseudomonas putida
Strain HB3267
Description/Title Sample from Pseudomonas putida HB3267
Annotated Genes 5478
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name France: Hospital of Besan?on
Isolation Source clinical

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida 15
rpoD
28		 nuoC
15		 ppsA
20		 ileS
20		 argS
11		 recA
33		 rpoB
7		 gyrB
24
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000325725.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604102
NCBI Taxonomy ID 1215088
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida HB3267, complete genome.
Pseudomonas putida HB3267 plasmid pPC9, complete sequence.

Annotated Features

Feature Count
gene 5478
CDS 5386
tRNA 70
rRNA 22

Subcellular Localization

Localization Count
Cytoplasmic 2356
Cytoplasmic Membrane 1223
Periplasmic 171
Outer Membrane 123
Extracellular 37
Unknown 1358
Unknown (This protein may have multiple localization sites) 117
Flagellar 16
Fimbrial 2

Replicons

Name Length GC
Pseudomonas putida HB3267, complete genome. 5875750 bp 62.6%
Replicon details
Pseudomonas putida HB3267 plasmid pPC9, complete sequence. 80360 bp 60.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs