Pseudomonas aeruginosa B136-33

Strain Overview
Organism Name Pseudomonas aeruginosa B136-33
Species Pseudomonas aeruginosa
Strain B136-33
Description/Title Sample from Pseudomonas aeruginosa B136-33
Annotated Genes 5904
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Isolation Source infant with community-acquired diarrhea

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1024
nuoD
1
guaA
24
aroE
2
ppsA
6
mutL
3
acsA
2
trpE
25
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6421010
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603669
NCBI Taxonomy ID 1280938
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa B136-33, complete genome.

Annotated Features

Feature Count
gene 5904
CDS 5828
tRNA 64
rRNA 12

Subcellular Localization

Localization Count
Cytoplasmic 2650
Cytoplasmic Membrane 1320
Periplasmic 174
Outer Membrane 166
Extracellular 72
Unknown 1303
Unknown (This protein may have multiple localization sites) 143
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa B136-33, complete genome. 6421010 bp 66.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs