Pseudomonas aeruginosa RP73

Strain Overview
Organism Name Pseudomonas aeruginosa RP73
Species Pseudomonas aeruginosa
Strain RP73
Description/Title Sample from Pseudomonas aeruginosa RP73
Annotated Genes 5864
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Germany: Hannover

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 198
mutL
11
nuoD
3
guaA
11
trpE
7
ppsA
27
acsA
11
aroE
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6342034
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603771
NCBI Taxonomy ID 1340851
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa RP73, complete genome.

Annotated Features

Feature Count
gene 5864
CDS 5762
tRNA 64
pseudo 26
rRNA 12

Subcellular Localization

Localization Count
Cytoplasmic 2611
Cytoplasmic Membrane 1330
Periplasmic 170
Outer Membrane 156
Extracellular 59
Unknown 1295
Unknown (This protein may have multiple localization sites) 141
Flagellar 17
Fimbrial 7
T3SS 1

Replicons

Name Length GC
Pseudomonas aeruginosa RP73, complete genome. 6342034 bp 66.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs