Pseudomonas aeruginosa 2192

Strain Overview
Organism Name Pseudomonas aeruginosa 2192
Species Pseudomonas aeruginosa
Strain 2192
Description/Title Sample from Pseudomonas aeruginosa 2192
Annotated Genes 6233
Partial Genes 34
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA: Boston

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
ppsA
4		 mutL
~3		 trpE
7		 nuoD
3		 acsA
6		 guaA
39?		 aroE
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000152545.1
Assembly Status latest
Scaffolds 1
Contigs 82
Contig N50 174666
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02595211
NCBI Taxonomy ID 350703
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6231
CDS 5904
tRNA 44
pseudo 2

Subcellular Localization

Localization Count
Cytoplasmic 2655
Cytoplasmic Membrane 1328
Periplasmic 164
Outer Membrane 157
Extracellular 70
Unknown 1381
Unknown (This protein may have multiple localization sites) 151
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence. 6905121 bp 65.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs