Pseudomonas aeruginosa PACS2

Strain Overview
Organism Name Pseudomonas aeruginosa PACS2
Species Pseudomonas aeruginosa
Strain PACS2
Description/Title Sample from Pseudomonas aeruginosa PACS2
Annotated Genes 5989
Partial Genes 20
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1394
trpE
7
mutL
3
ppsA
13
guaA
6
nuoD
74
aroE
11
acsA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 1
Contigs 1
Contig N50 6492423
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471994
NCBI Taxonomy ID 388272
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.

Annotated Features

Feature Count
gene 5981
CDS 5903
tRNA 64
pseudo 16
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2697
Cytoplasmic Membrane 1339
Periplasmic 168
Outer Membrane 162
Extracellular 68
Unknown 1314
Unknown (This protein may have multiple localization sites) 155
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome. 6492423 bp 66.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs