Pseudomonas aeruginosa PAK

Strain Overview
Organism Name Pseudomonas aeruginosa PAK (Cain et al., 2019) - Assembly GCF_902172305.2
Species Pseudomonas aeruginosa
Strain PAK
Description/Title Pseudomonas aeruginosa
Annotated Genes 5848
Partial Genes 26
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name
E-mail
Institution European Bioinformatics Institute
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 693
nuoD
4		 trpE
14		 aroE
5		 guaA
11		 acsA
11		 mutL
11		 ppsA
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_902172305.2
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6395872
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMEA1695737
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa PAK chromosome 1

Annotated Features

Feature Count
gene 5848
CDS 5769
tRNA 63
pseudo 43
rRNA 12
ncRNA 3
tmRNA 1

Replicons

Name Length GC
Pseudomonas aeruginosa PAK chromosome 1 6395872 bp 66.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF