Pseudomonas aeruginosa PAO1, PA3950

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3950
Name
Replicon chromosome
Genomic location 4430599 - 4431948 (- strand)
Transposon Mutants 4 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_252639.1
GI 15599145
Affymetrix PA3950_at
Entrez 878847
GenBank AAG07337.1
INSDC AAG07337.1
NCBI Locus Tag PA3950
protein_id(GenBank) gb|AAG07337.1|AE004813_4|gnl|PseudoCAP|PA3950
TIGR NTL03PA03950
UniParc UPI00000C5B92
UniProtKB Acc Q9HX66
UniProtKB ID Q9HX66_PSEAE
UniRef100 UniRef100_W0YXX7
UniRef50 UniRef50_Q0VRL6
UniRef90 UniRef90_A6V0F9

Product

Feature Type CDS
Coding Frame 1
Product Name
probable ATP-dependent RNA helicase
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 20.88
Kyte-Doolittle Hydrophobicity Value -0.141
Molecular Weight (kDa) 48.6
Isoelectric Point (pI) 10.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 644 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001728 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3950

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:18682]
E-value: 1.6e-70
Percent Identity: 41.1

References

No references are associated with this feature.