Pseudomonas putida S16, PPS_4506

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_4506
Name
Replicon chromosome
Genomic location 5090681 - 5091169 (+ strand)

Cross-References

RefSeq YP_004703917.1
GI 339489389
Entrez 10940120
INSDC AEJ15037.1
NCBI Locus Tag PPS_4506
UniParc UPI0002173E02
UniProtKB Acc F8G6B7
UniProtKB ID F8G6B7_PSEP6
UniRef100 UniRef100_A0A099N5Y0
UniRef50 UniRef50_B5E874
UniRef90 UniRef90_B0KHS7

Product

Feature Type CDS
Coding Frame 1
Product Name
Hcp1 family type VI secretion system effector
Synonyms
Evidence for Translation
Charge (pH 7) -1.87
Kyte-Doolittle Hydrophobicity Value -0.280
Molecular Weight (kDa) 17.6
Isoelectric Point (pI) 5.24

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 75 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000084 (770 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_4506

References

No references are associated with this feature.