Motif View

Internal ID 17654910
Source Database TransTermHP TERM 536
Feature Type terminator
Name
Rho-independent transcription terminator TERM 536
Sequence CCGGCGCCCACTGCCTGGGCGCCGG
Look for more occurrences
Start 2005509
End 2005533
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCAGGCCATGGAAG(5' tail) CCGGCGCCCA(5' stem) CTGCC(loop) TGGGCGCCGG(3' stem) TTCTTCCCGGCGATT(3' tail). Confidence: 100. opp_overlap 2005508, overlap 2005497

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685