Motif View

Internal ID 17655651
Source Database TransTermHP TERM 84
Feature Type terminator
Name
Rho-independent transcription terminator TERM 84
Sequence CCGCACCCCGCAAGGGTGCGG
Look for more occurrences
Start 421557
End 421577
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCGCCTCGCGAAAA(5' tail) CCGCACCC(5' stem) CGCAA(loop) GGGTGCGG(3' stem) TTTTTTTCTGCCCGG(3' tail). Confidence: 100. opp_overlap 421520 421557

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685