Motif View

Internal ID 17655777
Source Database TransTermHP TERM 272
Feature Type terminator
Name
Rho-independent transcription terminator TERM 272
Sequence CCCGCGCCTGTCGCGGG
Look for more occurrences
Start 1058761
End 1058777
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCCCGATGAACAAA(5' tail) CCCGCG(5' stem) CCTGT(loop) CGCGGG(3' stem) TTTTTTCGTTAGAAT(3' tail). Confidence: 100. opp_overlap 1058761

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685