Motif View

Internal ID 17656424
Source Database TransTermHP TERM 1279
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1279
Sequence GCGCCTGGCCATGCCGGGCGC
Look for more occurrences
Start 5291551
End 5291571
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGCCCCCATACCCA(5' tail) GCGCCTGGC(5' stem) CAT(loop) GCCGGGCGC(3' stem) TTTCCATGCCACAGG(3' tail). Confidence: 91. opp_overlap 5291536

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685