Motif View

Internal ID 17657189
Source Database TransTermHP TERM 971
Feature Type terminator
Name
Rho-independent transcription terminator TERM 971
Sequence GCCCCTCGCCCCCCACGGGCGAGGGGC
Look for more occurrences
Start 4327657
End 4327683
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGGCCTGACCCGACA(5' tail) GCCCCTCGCCC(5' stem) CCCAC(loop) GGGCGAGGGGC(3' stem) TGCTTTCGTTTCGCC(3' tail). Confidence: 93. opp_overlap 4327621, overlap 4327655 4327654

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685