Motif View

Internal ID 17657198
Source Database TransTermHP TERM 983
Feature Type terminator
Name
Rho-independent transcription terminator TERM 983
Sequence CGGGGCGCCCAGGGGCGCCCCG
Look for more occurrences
Start 4379238
End 4379259
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCCGCTAAGAGCAA(5' tail) CGGGGCGCC(5' stem) CAGG(loop) GGCGCCCCG(3' stem) TCCTCTTTCTCCGTC(3' tail). Confidence: 91. opp_overlap 4379218 4379238, overlap 4379232

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685