Motif View

Internal ID 17662949
Source Database TransTermHP TERM 1038
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1038
Sequence GCCCGCGCTGGTCAGTCGCGGGC
Look for more occurrences
Start 4821842
End 4821864
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGCAATAAAAAAAA(5' tail) GCCCGCGACT(5' stem) GACC(loop) AG-CGCGGGC(3' stem) TTCTTCATGACGGCC(3' tail). Confidence: 100. gap 1, opp_overlap 4821842

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685