Motif View

Internal ID 17668450
Source Database TransTermHP TERM 901
Feature Type terminator
Name
Rho-independent transcription terminator TERM 901
Sequence CCCGCCATAAGGGCGGG
Look for more occurrences
Start 3889722
End 3889738
Strand -
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAAGCTGTAAAAAAA(5' tail) CCCGCC(5' stem) CTTAT(loop) GGCGGG(3' stem) TTTTTTTATGGGCGT(3' tail). Confidence: 100. opp_overlap 3889722 3889710

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685