Motif View

Internal ID 17669944
Source Database TransTermHP TERM 69
Feature Type terminator
Name
Rho-independent transcription terminator TERM 69
Sequence ACAGCGATGCCCGGCACTGCGCCGGGCATCGCTGG
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Start 283099
End 283133
Strand -
Genomic Context
Replicon Pseudomonas fulva 12-X chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGTTCTGGTCAGAA(5' tail) CCAGCGATGCCCGGC(5' stem) GCAGT(loop) GCCGGGCATCGCTGT(3' stem) GTACCCGCAAGGCGG(3' tail). Confidence: 100. opp_overlap 283102, overlap 283084 283100 283102

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685