Motif View

Internal ID 17677194
Source Database TransTermHP TERM 1006
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1006
Sequence GCCGGGCATTGCCCGGC
Look for more occurrences
Start 4143052
End 4143068
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa DK2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCGCCAACGAAGAA(5' tail) GCCGGGC(5' stem) AAT(loop) GCCCGGC(3' stem) TTTTTCATGCCTGGC(3' tail). Confidence: 93. opp_overlap 4143052

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685