Motif View

Internal ID 17679094
Source Database TransTermHP TERM 361
Feature Type terminator
Name
Rho-independent transcription terminator TERM 361
Sequence GCCCCGGCGGACCGGGGC
Look for more occurrences
Start 1562576
End 1562593
Strand +
Genomic Context
Replicon Pseudomonas stutzeri CCUG 29243 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGTAGAAACAAGAAA(5' tail) GCCCCGG(5' stem) CGGA(loop) CCGGGGC(3' stem) TTTTTCGTTCTTTCG(3' tail). Confidence: 100. opp_overlap 1562569 1562576, overlap 1562569

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685