Motif View

Internal ID 17681457
Source Database TransTermHP TERM 1025
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1025
Sequence CGCGCTCGGGGCCGAGCGCG
Look for more occurrences
Start 4101885
End 4101904
Strand -
Genomic Context
Replicon Pseudomonas putida HB3267, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAAGCAGTCTCAAA(5' tail) CGCGCTCG(5' stem) GCCC(loop) CGAGCGCG(3' stem) CATTCACAATTCGGT(3' tail). Confidence: 90.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685