Motif View

Internal ID 17683253
Source Database TransTermHP TERM 772
Feature Type terminator
Name
Rho-independent transcription terminator TERM 772
Sequence GCCCCGCGATGCGGGGC
Look for more occurrences
Start 3376391
End 3376407
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACGGCCAAGAGAAA(5' tail) GCCCCGC(5' stem) GAT(loop) GCGGGGC(3' stem) TTCTTCGTATTCGGG(3' tail). Confidence: 90. opp_overlap 3376391

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685