Motif View

Internal ID 17683451
Source Database TransTermHP TERM 1071
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1071
Sequence GCCCGCGCTGGTCAGTCGCGGGC
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Start 4654932
End 4654954
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCATGCATTAAAAA(5' tail) GCCCGCGACT(5' stem) GACC(loop) AG-CGCGGGC(3' stem) TTCTTCATGACGGCC(3' tail). Confidence: 100. gap 1, opp_overlap 4654932

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685