Motif View

Internal ID 17688345
Source Database TransTermHP TERM 1076
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1076
Sequence CCCCCGTCGTTACGCGCCGGGGG
Look for more occurrences
Start 4634313
End 4634335
Strand +
Genomic Context
Replicon Pseudomonas poae RE*1-1-14, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGTTGATACAACACA(5' tail) CCCCCGTCGT(5' stem) TAC(loop) GCGCCGGGGG(3' stem) TTTTGGTGCTTGCTC(3' tail). Confidence: 100. opp_overlap 4634311 4634309 4634313

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685